If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ), 'gf_id' => 'HOM05D000720', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000720' ), 'data_identifier' => 'HOM05D000720', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000720', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '803', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01410' => 'bna', 'A02p13960' => 'bna', 'A02p44200' => 'bna', 'A03p33010' => 'bna', 'A03p47620' => 'bna', 'A03p65290' => 'bna', 'A07p16460' => 'bna', 'A07p34910' => 'bna', 'A09p09330' => 'bna', 'A09p43060' => 'bna', 'Aa31LG1G15980' => 'aar', 'Aa31LG2G3500' => 'aar', 'Aa31LG4G18390' => 'aar', 'Aa31LG5G13050' => 'aar', 'Aa31LG6G14420' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.992' => 'aag', 'Actinidia00382' => 'ach', 'Actinidia10188' => 'ach', 'Actinidia13658' => 'ach', 'Actinidia16436' => 'ach', 'Actinidia17637' => 'ach', 'Actinidia18934' => 'ach', 'Actinidia22685' => 'ach', 'Actinidia26303' => 'ach', 'Actinidia27986' => 'ach', 'Actinidia32828' => 'ach', 'Actinidia34368' => 'ach', 'Actinidia35088' => 'ach', 'Ah.02g125530' => 'amhyb', 'Ah.03g137640' => 'amhyb', 'Ah.03g140370' => 'amhyb', 'Ah.10g037810' => 'amhyb', 'AL2G25480' => 'aly', 'AL2G27400' => 'aly', 'AL3G11910' => 'aly', 'AL5G29970' => 'aly', 'AL7G13220' => 'aly', 'AL8G43890' => 'aly', 'Aqoxy3G00300' => 'aox', 'Aqoxy5G00893' => 'aox', 'Aqoxy6G02702' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3895TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E46TB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3HPWP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1W4VE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDM8J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I49I5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISYP38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU0FB7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIZ31U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN2BTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LBX204' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2ADPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3DBMV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TTQR8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YW2RJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62C6M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6X6WE' => 'arhy', 'AT1G67100' => 'ath', 'AT1G68510' => 'ath', 'AT3G02550' => 'ath', 'AT3G49940' => 'ath', 'AT4G37540' => 'ath', 'AT5G67420' => 'ath', 'ATR0019G034' => 'atr', 'ATR0019G054' => 'atr', 'ATR1125G097' => 'atr', 'Atru.chr1.1708' => 'acertr', 'Atru.chr11.69' => 'acertr', 'Atru.chr13.815' => 'acertr', 'Atru.chr3.159' => 'acertr', 'Atru.chr3.188' => 'acertr', 'Atru.chr5.2380' => 'acertr', 'AUR62002865' => 'cqu', 'AUR62003987' => 'cqu', 'AUR62008990' => 'cqu', 'AUR62022498' => 'cqu', 'AUR62023311' => 'cqu', 'AUR62035220' => 'cqu', 'AUR62038713' => 'cqu', 'AUR62040260' => 'cqu', 'BcaB01g00652' => 'bca', 'BcaB02g09921' => 'bca', 'BcaB03g15823' => 'bca', 'BcaB04g20051' => 'bca', 'BcaB05g24239' => 'bca', 'BcaB05g24390' => 'bca', 'BcaC01g04439' => 'bca', 'BcaC01g04558' => 'bca', 'BcaC03g14800' => 'bca', 'BcaC03g18373' => 'bca', 'BcaC04g23226' => 'bca', 'BcaC04g23272' => 'bca', 'BcaC06g33118' => 'bca', 'BcaC06g33275' => 'bca', 'BcaC07g39459' => 'bca', 'BcaC08g46269' => 'bca', 'BcaC09g47708' => 'bca', 'BcaC09g49985' => 'bca', 'BcaNung02061' => 'bca', 'BcaNung02940' => 'bca', 'BcaNung05407' => 'bca', 'BcaNung05903' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00060' => 'bna', 'BolC1t00154H' => 'bol', 'BolC1t02981H' => 'bol', 'BolC1t05897H' => 'bol', 'BolC2t08400H' => 'bol', 'BolC2t12512H' => 'bol', 'BolC3t16281H' => 'bol', 'BolC6t39283H' => 'bol', 'BolC7t42944H' => 'bol', 'BolC7t45081H' => 'bol', 'BolC7t46659H' => 'bol', 'BolC8t50115H' => 'bol', 'BolC9t53933H' => 'bol', 'BolC9t53985H' => 'bol', 'BraA01t00137Z' => 'bra', 'BraA02t06457Z' => 'bra', 'BraA02t09343Z' => 'bra', 'BraA03t12469Z' => 'bra', 'BraA03t13875Z' => 'bra', 'BraA03t15584Z' => 'bra', 'BraA07t29372Z' => 'bra', 'BraA09t36585Z' => 'bra', 'BraA09t39775Z' => 'bra', 'BraSC246t45836Z' => 'bra', 'C01p01590' => 'bna', 'C01p30370' => 'bna', 'C02p22470' => 'bna', 'C02p64480' => 'bna', 'C03p40160' => 'bna', 'C06p41400' => 'bna', 'C07p24180' => 'bna', 'C07p45600' => 'bna', 'C07p62450' => 'bna', 'C08p24960' => 'bna', 'C09p10330' => 'bna', 'C09p10910' => 'bna', 'CAN.G1075.21' => 'can', 'CAN.G128.132' => 'can', 'CAN.G1889.1' => 'can', 'CAN.G606.49' => 'can', 'CAN.G610.85' => 'can', 'CAN.G625.11' => 'can', 'CAN.G724.8' => 'can', 'CAN.G988.7' => 'can', 'CANSAT01G0180' => 'cansat', 'CANSAT01G3149' => 'cansat', 'CANSAT25G1120' => 'cansat', 'CANSAT25G1133' => 'cansat', 'CANSAT25G1590' => 'cansat', 'CANSAT25G3419' => 'cansat', 'CANSAT64G2008' => 'cansat', 'CANSAT80G1037' => 'cansat', 'CARHR059550' => 'chi', 'CARHR061290' => 'chi', 'CARHR076550' => 'chi', 'CARHR159020' => 'chi', 'CARHR197220' => 'chi', 'CARHR245930' => 'chi', 'CARHR280170' => 'chi', 'Carub.0002s1340' => 'cru', 'Carub.0002s1502' => 'cru', 'Carub.0003s0166' => 'cru', 'Carub.0005s1630' => 'cru', 'Carub.0006s1428' => 'cru', 'Carub.0007s0272' => 'cru', 'Carub.0008s2705' => 'cru', 'Carub.0055s0005' => 'cru', 'Ca_04060_v3' => 'car', 'Ca_11173_v3' => 'car', 'Ca_13734_v3' => 'car', 'Ca_13923_v3' => 'car', 'Ca_24717_v3' => 'car', 'CBR_g4676' => 'cbr', 'Cc00_g15720' => 'ccan', 'Cc02_g19720' => 'ccan', 'Cc04_g07130' => 'ccan', 'Cc07_g06900' => 'ccan', 'Cc10_g05640' => 'ccan', 'Cc11_g10140' => 'ccan', 'CDE01G0672' => 'cde', 'CDE04G0395' => 'cde', 'CDE04G1262' => 'cde', 'CDE06G0046' => 'cde', 'CDE06G2748' => 'cde', 'CDE07G1413' => 'cde', 'CDE07G1589' => 'cde', 'CDE12G0698' => 'cde', 'Cfa000352' => 'cfa', 'Cfa004109' => 'cfa', 'Cfa004640' => 'cfa', 'Cfa007928' => 'cfa', 'Cfa013677' => 'cfa', 'Cfa017337' => 'cfa', 'Cfa018595' => 'cfa', 'Cfa019781' => 'cfa', 'Ciclev10003746m.g' => 'ccl', 'Ciclev10013705m.g' => 'ccl', 'Ciclev10016422m.g' => 'ccl', 'Ciclev10022068m.g' => 'ccl', 'Ciclev10026374m.g' => 'ccl', 'Ciclev10029274m.g' => 'ccl', 'CiPaw.01G006200' => 'cil', 'CiPaw.03G061100' => 'cil', 'CiPaw.05G016400' => 'cil', 'CiPaw.07G176400' => 'cil', 'CiPaw.08G049300' => 'cil', 'CiPaw.15G130500' => 'cil', 'ClCG01G017420' => 'cla', 'ClCG05G011810' => 'cla', 'ClCG05G020510' => 'cla', 'ClCG05G020520' => 'cla', 'ClCG05G022700' => 'cla', 'ClCG06G014820' => 'cla', 'COL.COLO4_09319' => 'col', 'COL.COLO4_11311' => 'col', 'COL.COLO4_11550' => 'col', 'COL.COLO4_28520' => 'col', 'COL.COLO4_32534' => 'col', 'Cpa.g.sc1.42' => 'cpa', 'Cpa.g.sc106.63' => 'cpa', 'Cpa.g.sc21.100' => 'cpa', 'Cpa.g.sc282.15' => 'cpa', 'Cpa.g.sc3.514' => 'cpa', 'Cpa.g.sc6.40' => 'cpa', 'CsaV3_1G003810' => 'csa', 'CsaV3_3G020650' => 'csa', 'CsaV3_4G034940' => 'csa', 'CsaV3_5G034330' => 'csa', 'CsaV3_6G043970' => 'csa', 'CSS0006814' => 'camsi', 'CSS0015221' => 'camsi', 'CSS0020842' => 'camsi', 'CSS0024718' => 'camsi', 'CSS0026995' => 'camsi', 'CSS0036036' => 'camsi', 'CSS0039639' => 'camsi', 'CSS0039735' => 'camsi', 'CSS0041893' => 'camsi', 'CSS0047302' => 'camsi', 'CSS0047595' => 'camsi', 'DCAR_000361' => 'dca', 'DCAR_012590' => 'dca', 'DCAR_021467' => 'dca', 'DCAR_025785' => 'dca', 'DCAR_029117' => 'dca', 'DCAR_031787' => 'dca', 'Dinv15668' => 'din', 'Dinv15797' => 'din', 'Dinv16466' => 'din', 'Dinv21085' => 'din', 'Dinv26912' => 'din', 'Dinv30075' => 'din', 'Dinv33942' => 'din', 'Dinv34827' => 'din', 'Dinv39249' => 'din', 'Dinv42225' => 'din', 'Dinv44968' => 'din', 'Duzib041G0700' => 'dzi', 'Duzib052G0185' => 'dzi', 'Duzib093G1817' => 'dzi', 'Duzib116G0329' => 'dzi', 'Duzib132G0890' => 'dzi', 'Duzib133G0316' => 'dzi', 'Duzib138G1749' => 'dzi', 'Duzib147G0835' => 'dzi', 'Duzib187G1571' => 'dzi', 'Duzib205G0037' => 'dzi', 'Duzib248G0046' => 'dzi', 'Duzib248G1012' => 'dzi', 'Duzib264G0126' => 'dzi', 'ECA232G3314' => 'eca', 'ECA232G4029' => 'eca', 'ECA234G1158' => 'eca', 'ECA236G4097' => 'eca', 'ECA238G4542' => 'eca', 'ECA246G5001' => 'eca', 'ECA247G1998' => 'eca', 'EL10Ac2g04572' => 'bvu', 'EL10Ac6g14403' => 'bvu', 'EL10Ac6g15640' => 'bvu', 'Eucgr.B03016' => 'egr', 'Eucgr.F00115' => 'egr', 'Eucgr.F02492' => 'egr', 'Eucgr.G01261' => 'egr', 'Eucgr.G02321' => 'egr', 'Eucgr.H02293' => 'egr', 'Eucgr.J01501' => 'egr', 'Eucgr.K02222' => 'egr', 'FAN02G0343' => 'fan', 'FAN05G4276' => 'fan', 'FAN07G0541' => 'fan', 'FAN09G0902' => 'fan', 'FAN12G1887' => 'fan', 'FAN12G3252' => 'fan', 'FAN12G3925' => 'fan', 'FAN14G4093' => 'fan', 'FAN15G0517' => 'fan', 'FAN15G1843' => 'fan', 'FAN19G1390' => 'fan', 'FAN20G2609' => 'fan', 'FAN20G2953' => 'fan', 'FAN22G0926' => 'fan', 'FAN23G2163' => 'fan', 'FAN24G0523' => 'fan', 'FAN24G1348' => 'fan', 'FAN26G1895' => 'fan', 'FAN27G0635' => 'fan', 'FAN27G1034' => 'fan', 'FAN28G1330' => 'fan', 'FvH4_1g17380' => 'fve', 'FvH4_2g04090' => 'fve', 'FvH4_2g33260' => 'fve', 'FvH4_4g26220' => 'fve', 'FvH4_4g27380' => 'fve', 'FvH4_5g26601' => 'fve', 'FvH4_6g17581' => 'fve', 'FvH4_6g45150' => 'fve', 'Glyma.01G192600' => 'gma', 'Glyma.04G044800' => 'gma', 'Glyma.05G103300' => 'gma', 'Glyma.07G091600' => 'gma', 'Glyma.08G261900' => 'gma', 'Glyma.08G365100' => 'gma', 'Glyma.10G258100' => 'gma', 'Glyma.11G049300' => 'gma', 'Glyma.13G046300' => 'gma', 'Glyma.14G088200' => 'gma', 'Glyma.17G162000' => 'gma', 'Glyma.17G236300' => 'gma', 'Glyma.18G297100' => 'gma', 'Glyma.19G046300' => 'gma', 'Glyma.20G115700' => 'gma', 'Glyma.20G133000' => 'gma', 'Gohir.A01G184500' => 'ghi', 'Gohir.A03G146700' => 'ghi', 'Gohir.A03G183600' => 'ghi', 'Gohir.A05G208700' => 'ghi', 'Gohir.A06G023400' => 'ghi', 'Gohir.A09G047700' => 'ghi', 'Gohir.A11G048300' => 'ghi', 'Gohir.A11G216500' => 'ghi', 'Gohir.A12G054200' => 'ghi', 'Gohir.A12G082165' => 'ghi', 'Gohir.D01G175500' => 'ghi', 'Gohir.D02G169800' => 'ghi', 'Gohir.D02G205200' => 'ghi', 'Gohir.D05G212100' => 'ghi', 'Gohir.D06G020600' => 'ghi', 'Gohir.D09G048900' => 'ghi', 'Gohir.D11G051900' => 'ghi', 'Gohir.D11G206900' => 'ghi', 'Gohir.D12G052800' => 'ghi', 'Gohir.D12G073700' => 'ghi', 'Gorai.002G217800' => 'gra', 'Gorai.005G190300' => 'gra', 'Gorai.005G232500' => 'gra', 'Gorai.006G061200' => 'gra', 'Gorai.007G056300' => 'gra', 'Gorai.007G222000' => 'gra', 'Gorai.008G056000' => 'gra', 'Gorai.008G081100' => 'gra', 'Gorai.009G218800' => 'gra', 'Gorai.010G025100' => 'gra', 'GSVIVG01000141001' => 'vvi', 'GSVIVG01008284001' => 'vvi', 'GSVIVG01009360001' => 'vvi', 'GSVIVG01011895001' => 'vvi', 'GSVIVG01011896001' => 'vvi', 'GSVIVG01031035001' => 'vvi', 'GSVIVG01037853001' => 'vvi', 'HanXRQChr00c1184g0578751' => 'han', 'HanXRQChr04g0128591' => 'han', 'HanXRQChr07g0203891' => 'han', 'HanXRQChr09g0266601' => 'han', 'HanXRQChr10g0281581' => 'han', 'HanXRQChr10g0303811' => 'han', 'HanXRQChr10g0312891' => 'han', 'HanXRQChr12g0376521' => 'han', 'HanXRQChr13g0416231' => 'han', 'HanXRQChr14g0438751' => 'han', 'HanXRQChr14g0449461' => 'han', 'HanXRQChr16g0509071' => 'han', 'Haze_10238' => 'cav', 'Haze_14147' => 'cav', 'Haze_15302' => 'cav', 'Haze_17482' => 'cav', 'Haze_18670' => 'cav', 'Haze_22318' => 'cav', 'Hma1.2p1_0061F.1_g033910' => 'hma', 'Hma1.2p1_0210F.1_g089600' => 'hma', 'Hma1.2p1_0550F.1_g177460' => 'hma', 'Hma1.2p1_0653F.1_g196310' => 'hma', 'Hma1.2p1_0730F.1_g209850' => 'hma', 'Hma1.2p1_1023F.1_g248860' => 'hma', 'Hma1.2p1_1174F.1_g263780' => 'hma', 'Hma1.2p1_1773F.1_g301700' => 'hma', 'Hma1.2p1_2675F.1_g326715' => 'hma', 'HPP92_004805' => 'vpl', 'HPP92_007759' => 'vpl', 'HPP92_009534' => 'vpl', 'HPP92_009547' => 'vpl', 'HPP92_009902' => 'vpl', 'HPP92_023668' => 'vpl', 'HPP92_023685' => 'vpl', 'HPP92_026097' => 'vpl', 'Hund02391' => 'sun', 'Hund05313' => 'sun', 'Hund13935' => 'sun', 'Hund13937' => 'sun', 'Hund16150' => 'sun', 'Hund16231' => 'sun', 'Hund25063' => 'sun', 'Lalb_Chr02g0145991' => 'lal', 'Lalb_Chr02g0158231' => 'lal', 'Lalb_Chr04g0254731' => 'lal', 'Lalb_Chr05g0213611' => 'lal', 'Lalb_Chr05g0225991' => 'lal', 'Lalb_Chr06g0166101' => 'lal', 'Lalb_Chr06g0174611' => 'lal', 'Lalb_Chr10g0100021' => 'lal', 'Lalb_Chr14g0371171' => 'lal', 'Lalb_Chr16g0378801' => 'lal', 'Lalb_Chr16g0389171' => 'lal', 'Lalb_Chr21g0308121' => 'lal', 'Lalb_Chr21g0308931' => 'lal', 'Lj1g0001984' => 'lja', 'Lj1g0011031' => 'lja', 'Lj2A443T54' => 'lonja', 'Lj2g0006592' => 'lja', 'Lj2g0012198' => 'lja', 'Lj2g0028085' => 'lja', 'Lj3A1014T45' => 'lonja', 'Lj4A759T46' => 'lonja', 'Lj4C192T1' => 'lonja', 'Lj4g0022699' => 'lja', 'Lj5g0018889' => 'lja', 'Lj7A91T10' => 'lonja', 'Lj9C326T18' => 'lonja', 'Lsat_1_v5_gn_0_8321' => 'lsa', 'Lsat_1_v5_gn_1_22740' => 'lsa', 'Lsat_1_v5_gn_2_83120' => 'lsa', 'Lsat_1_v5_gn_3_80041' => 'lsa', 'Lsat_1_v5_gn_3_87100' => 'lsa', 'Lsat_1_v5_gn_4_130520' => 'lsa', 'Lsat_1_v5_gn_4_153841' => 'lsa', 'Lsat_1_v5_gn_5_114340' => 'lsa', 'Lsat_1_v5_gn_7_85540' => 'lsa', 'Manes.01G110000' => 'mes', 'Manes.02G068400' => 'mes', 'Manes.05G180800' => 'mes', 'Manes.06G068500' => 'mes', 'Manes.07G058400' => 'mes', 'Manes.12G110600' => 'mes', 'Manes.13G113000' => 'mes', 'Manes.14G102500' => 'mes', 'Manes.18G045200' => 'mes', 'Mapoly0050s0090' => 'mpo', 'MBI10_g34306_MAGBIO' => 'mbi', 'MBI16_g32441_MAGBIO' => 'mbi', 'MBI16_g33347_MAGBIO' => 'mbi', 'MBI16_g45116_MAGBIO' => 'mbi', 'MD00G1015800' => 'mdo', 'MD02G1165000' => 'mdo', 'MD05G1097900' => 'mdo', 'MD08G1086800' => 'mdo', 'MD09G1088700' => 'mdo', 'MD10G1103500' => 'mdo', 'MD15G1071500' => 'mdo', 'MD15G1294700' => 'mdo', 'MD16G1042900' => 'mdo', 'MD17G1078600' => 'mdo', 'Medtr1g106420' => 'mtr', 'Medtr1g110840' => 'mtr', 'Medtr4g095600' => 'mtr', 'Medtr5g015880' => 'mtr', 'Medtr6g018270' => 'mtr', 'Medtr6g054080' => 'mtr', 'Medtr6g054150' => 'mtr', 'Medtr6g453130' => 'mtr', 'Medtr7g007010' => 'mtr', 'MELO3C007620.2' => 'cme', 'MELO3C012250.2' => 'cme', 'MELO3C016808.2' => 'cme', 'MELO3C017305.2' => 'cme', 'MELO3C023802.2' => 'cme', 'Migut.B00434' => 'egut', 'Migut.E00341' => 'egut', 'Migut.H00213' => 'egut', 'Migut.H00361' => 'egut', 'Migut.L00203' => 'egut', 'Migut.L00314' => 'egut', 'Migut.N02770' => 'egut', 'Migut.O00688' => 'egut', 'MSTRG.15292' => 'ama', 'MSTRG.15359' => 'ama', 'MSTRG.2235' => 'ama', 'MSTRG.23571' => 'ama', 'MSTRG.23686' => 'ama', 'MSTRG.27755' => 'ama', 'MSTRG.2825' => 'ama', 'MSTRG.3572' => 'ama', 'MSTRG.5325' => 'ama', 'MSTRG.7667' => 'ama', 'MSTRG.839' => 'ama', 'Nitab4.5_0000164g0200' => 'nta', 'Nitab4.5_0000651g0110' => 'nta', 'Nitab4.5_0000682g0050' => 'nta', 'Nitab4.5_0000791g0130' => 'nta', 'Nitab4.5_0000974g0060' => 'nta', 'Nitab4.5_0001105g0150' => 'nta', 'Nitab4.5_0001569g0160' => 'nta', 'Nitab4.5_0001772g0020' => 'nta', 'Nitab4.5_0002003g0070' => 'nta', 'Nitab4.5_0003373g0060' => 'nta', 'Nitab4.5_0005276g0010' => 'nta', 'Nitab4.5_0005385g0030' => 'nta', 'Nitab4.5_0006069g0010' => 'nta', 'Nitab4.5_0008474g0010' => 'nta', 'Nitab4.5_0010808g0020' => 'nta', 'Nn1g04600' => 'nnu', 'Nn1g04664' => 'nnu', 'Nn3g17843' => 'nnu', 'Nn4g23835' => 'nnu', 'Nn5g30544' => 'nnu', 'Oeu003567.1' => 'oeu', 'Oeu011142.1' => 'oeu', 'Oeu024993.1' => 'oeu', 'Oeu025658.1' => 'oeu', 'Oeu030785.1' => 'oeu', 'Oeu033596.1' => 'oeu', 'Oeu034245.1' => 'oeu', 'Oeu037272.2' => 'oeu', 'Oeu039285.1' => 'oeu', 'Oeu039466.1' => 'oeu', 'Oeu040584.1' => 'oeu', 'Oeu050868.1' => 'oeu', 'Oeu054190.1' => 'oeu', 'Oeu057371.1' => 'oeu', 'Os01g0129600' => 'osa', 'Os01g0511000' => 'osa', 'Os03g0445700' => 'osa', 'Os03g0609500' => 'osa', 'Os07g0589000' => 'osa', 'Peaxi162Scf00003g02638' => 'pax', 'Peaxi162Scf00015g00098' => 'pax', 'Peaxi162Scf00016g02736' => 'pax', 'Peaxi162Scf00081g01411' => 'pax', 'Peaxi162Scf00264g00012' => 'pax', 'Peaxi162Scf00382g00711' => 'pax', 'Peaxi162Scf00814g00013' => 'pax', 'PGR004G1498' => 'pgr', 'PGR042G0016' => 'pgr', 'PGR044G0416' => 'pgr', 'PGR083G1381' => 'pgr', 'PGR102G0960' => 'pgr', 'PGR102G2090' => 'pgr', 'PGR119G0436' => 'pgr', 'PGSC0003DMG400005719' => 'stu', 'PGSC0003DMG400012653' => 'stu', 'PGSC0003DMG400014547' => 'stu', 'PGSC0003DMG400021509' => 'stu', 'PGSC0003DMG400024936' => 'stu', 'PGSC0003DMG400025752' => 'stu', 'Phvul.002G012200' => 'pvu', 'Phvul.003G035900' => 'pvu', 'Phvul.003G236200' => 'pvu', 'Phvul.004G064700' => 'pvu', 'Phvul.004G157101' => 'pvu', 'Phvul.007G044200' => 'pvu', 'Phvul.008G005500' => 'pvu', 'Potri.001G295700' => 'ptr', 'Potri.002G119400' => 'ptr', 'Potri.004G100100' => 'ptr', 'Potri.005G145500' => 'ptr', 'Potri.007G053600' => 'ptr', 'Potri.008G120600' => 'ptr', 'Potri.009G089600' => 'ptr', 'Potri.010G125000' => 'ptr', 'Potri.012G056800' => 'ptr', 'Potri.014G017400' => 'ptr', 'Potri.017G114500' => 'ptr', 'Pp3c15_21350' => 'ppa', 'Pp3c16_1150' => 'ppa', 'Pp3c18_9980' => 'ppa', 'Pp3c21_16050' => 'ppa', 'Pp3c27_3280' => 'ppa', 'Pp3c5_6300' => 'ppa', 'Pp3c6_26790' => 'ppa', 'Pp3c9_22290' => 'ppa', 'Prupe.1G311000' => 'ppe', 'Prupe.1G424400' => 'ppe', 'Prupe.3G236200' => 'ppe', 'Prupe.6G223100' => 'ppe', 'Prupe.8G142100' => 'ppe', 'Psat0s2166g0120' => 'psa', 'Psat1g083200' => 'psa', 'Psat2g170880' => 'psa', 'Psat3g204880' => 'psa', 'Psat6g215520' => 'psa', 'Psat6g228720' => 'psa', 'PSO017G0735' => 'pso', 'PSO017G1898' => 'pso', 'PSO170G1721' => 'pso', 'PSO478G5327' => 'pso', 'QL02p052323' => 'qlo', 'QL02p077847' => 'qlo', 'QL06p039808' => 'qlo', 'QL10p025297' => 'qlo', 'QL11p031490' => 'qlo', 'QL12p037700' => 'qlo', 'RcHm_v2.0_Chr2g0107561' => 'rch', 'RcHm_v2.0_Chr2g0162621' => 'rch', 'RcHm_v2.0_Chr4g0435181' => 'rch', 'RcHm_v2.0_Chr6g0253441' => 'rch', 'RcHm_v2.0_Chr6g0309381' => 'rch', 'Rhsim05G0090300' => 'rsi', 'Rhsim06G0061000' => 'rsi', 'Rhsim06G0061100' => 'rsi', 'Rhsim06G0061200' => 'rsi', 'Rhsim06G0061300' => 'rsi', 'Rhsim06G0061400' => 'rsi', 'Rhsim08G0082300' => 'rsi', 'Rhsim08G0094900' => 'rsi', 'Rhsim11G0154000' => 'rsi', 'Rhsim11G0154100' => 'rsi', 'Rhsim12G0084700' => 'rsi', 'Rhsim12G0143300' => 'rsi', 'RhsimUnG0125200' => 'rsi', 'RhsimUnG0125300' => 'rsi', 'Sabra02G0094000' => 'sbr', 'Sabra04G0079800' => 'sbr', 'Sabra05G0116400' => 'sbr', 'Sabra07G0046900' => 'sbr', 'Sabra08G0091500' => 'sbr', 'Sabra09G0069500' => 'sbr', 'Sabra10G0094900' => 'sbr', 'Sabra12G0040300' => 'sbr', 'Sabra14G0011300' => 'sbr', 'Sabra17G0094800' => 'sbr', 'SalBow1G0944' => 'sbo', 'SalBow3G3769' => 'sbo', 'SalBow3G3914' => 'sbo', 'SalBow5G2404' => 'sbo', 'SalBow5G3386' => 'sbo', 'SalBow5G4814' => 'sbo', 'SalBow6G2071' => 'sbo', 'SalBow6G4281' => 'sbo', 'SalBow6G6613' => 'sbo', 'SalBow6G6759' => 'sbo', 'SalBow8G1663' => 'sbo', 'SalBow8G4415' => 'sbo', 'SalBow8G5529' => 'sbo', 'Sc10g0001210' => 'sci', 'Sc11g0008300' => 'sci', 'Sc14g0007410' => 'sci', 'Sc18g0003600' => 'sci', 'Sc26g0004150' => 'sci', 'Sed0003903' => 'sed', 'Sed0004474' => 'sed', 'Sed0006177' => 'sed', 'Sed0012384' => 'sed', 'Sed0017984' => 'sed', 'Sed0018143' => 'sed', 'Sed0018191' => 'sed', 'SEGI_07860' => 'sgi', 'SEGI_11963' => 'sgi', 'SEGI_17696' => 'sgi', 'SEGI_25011' => 'sgi', 'SEGI_26618' => 'sgi', 'SEGI_35703' => 'sgi', 'SEGI_35896' => 'sgi', 'SEGI_41215' => 'sgi', 'SGA_v2.0_scaffold13G06421' => 'sas', 'SGA_v2.0_scaffold14G06863' => 'sas', 'SGA_v2.0_scaffold15G07430' => 'sas', 'SGA_v2.0_scaffold170G38761' => 'sas', 'SGA_v2.0_scaffold28G11820' => 'sas', 'SGA_v2.0_scaffold629G53284' => 'sas', 'SGA_v2.0_scaffold72G24087' => 'sas', 'SGA_v2.0_scaffold90G27711' => 'sas', 'SHI22437' => 'shi', 'SMO174G0172' => 'smo', 'SMO198G0084' => 'smo', 'SMO356G0460' => 'smo', 'Solyc01g107190.3' => 'sly', 'Solyc02g085910.4' => 'sly', 'Solyc02g092550.3' => 'sly', 'Solyc03g119530.3' => 'sly', 'Solyc04g077990.3' => 'sly', 'Solyc05g009320.4' => 'sly', 'Sopen01g049450' => 'spe', 'Sopen02g030580' => 'spe', 'Sopen02g037120' => 'spe', 'Sopen03g038360' => 'spe', 'Sopen04g031590' => 'spe', 'Sopen05g005070' => 'spe', 'Sp2g29230' => 'spa', 'Sp3g01580' => 'spa', 'Sp5g12170' => 'spa', 'Sp5g22030' => 'spa', 'Sp5g23580' => 'spa', 'Sp7g35220' => 'spa', 'TAR371G0266' => 'tar', 'TAR374G1320' => 'tar', 'TAR376G0060' => 'tar', 'TAR381G0143' => 'tar', 'TAR622G0929' => 'tar', 'TAR625G0112' => 'tar', 'TAR628G0718' => 'tar', 'TAR629G1234' => 'tar', 'THA.LOC104803006' => 'tha', 'THA.LOC104805565' => 'tha', 'THA.LOC104807853' => 'tha', 'THA.LOC104808415' => 'tha', 'THA.LOC104819256' => 'tha', 'THA.LOC104821229' => 'tha', 'THA.LOC104823861' => 'tha', 'THA.LOC104825768' => 'tha', 'THA.LOC104827564' => 'tha', 'Thecc.01G069800' => 'tca', 'Thecc.02G115100' => 'tca', 'Thecc.02G230900' => 'tca', 'Thecc.03G034900' => 'tca', 'Thecc.04G135000' => 'tca', 'Thecc.08G090600' => 'tca', 'Thhalv10004811m.g' => 'esa', 'Thhalv10010666m.g' => 'esa', 'Thhalv10019048m.g' => 'esa', 'Thhalv10019494m.g' => 'esa', 'Thhalv10021328m.g' => 'esa', 'Thhalv10026086m.g' => 'esa', 'TPR.G1497' => 'tpr', 'TPR.G20943' => 'tpr', 'TPR.G23857' => 'tpr', 'TPR.G31108' => 'tpr', 'TPR.G32457' => 'tpr', 'TPR.G36439' => 'tpr', 'TPR.G40040' => 'tpr', 'TPR.G4563' => 'tpr', 'TPR.G9710' => 'tpr', 'TWI09G0357' => 'twi', 'TWI12G0465' => 'twi', 'TWI12G1336' => 'twi', 'TWI53G1362' => 'twi', 'TWI60G0090' => 'twi', 'TWI73G1143' => 'twi', 'TWI74G1041' => 'twi', 'TWI77G0143' => 'twi', 'unitig_21.g20964' => 'ugi', 'unitig_26.g10258' => 'ugi', 'unitig_27.g25189' => 'ugi', 'unitig_32.g11757' => 'ugi', 'unitig_32.g11758' => 'ugi', 'unitig_52.g17133' => 'ugi', 'unitig_52.g17143' => 'ugi', 'unitig_52.g17144' => 'ugi', 'unitig_52.g17145' => 'ugi', 'unitig_52.g17146' => 'ugi', 'unitig_52.g17147' => 'ugi', 'unitig_52.g17590' => 'ugi', 'unitig_578.g16141' => 'ugi', 'unitig_62.g23713' => 'ugi', 'unitig_699.g19488' => 'ugi', 'unitig_699.g19489' => 'ugi', 'unitig_736.g22557' => 'ugi', 'unitig_747.g21200' => 'ugi', 'unitig_748.g8598' => 'ugi', 'unitig_8.g3257' => 'ugi', 'unitig_899.g14512' => 'ugi', 'vmacro01383' => 'vma', 'vmacro01970' => 'vma', 'vmacro16448' => 'vma', 'vmacro17998' => 'vma', 'vmacro18076' => 'vma', 'vmacro19529' => 'vma', 'vmacro21439' => 'vma', 'vmacro21440' => 'vma', 'vmacro21441' => 'vma', 'vmacro21442' => 'vma', 'vmacro21443' => 'vma', 'vmacro21444' => 'vma', 'VMungo0251G0022' => 'vmu', 'VMungo0464G1356' => 'vmu', 'VMungo0464G1359' => 'vmu', 'VMungo0647G1619' => 'vmu', 'VMungo0720G0762' => 'vmu', 'VMungo1215G2885' => 'vmu', 'VMungo1215G3432' => 'vmu', 'VMungo1383G0664' => 'vmu', 'VMungo1383G1449' => 'vmu', 'Zm00001eb019930' => 'zma', 'Zm00001eb020740' => 'zma', 'Zm00001eb051620' => 'zma', 'Zm00001eb108240' => 'zma', 'Zm00001eb125420' => 'zma', 'Zm00001eb292980' => 'zma', 'Zm00001eb326200' => 'zma', 'Zm00001eb353210' => 'zma', 'Zm00001eb353230' => 'zma' ) $gf_id = 'HOM05D000720' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000720' ) $data_identifier = 'HOM05D000720' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 8, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 8, 'gma' => (int) 16, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 13, 'lja' => (int) 7, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppa' => (int) 8, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 21, 'vma' => (int) 12, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb353230' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1